Fischer, Alexis D., Hayashi, K., McGaraghan, A., and Kudela, R., 2020. Return of the "age of dinoflagellates" in Monterey Bay: Drivers of dinoflagellate dominance examined using automated imaging flow cytometry and long-term time series analysis. Limnology and Oceanography 9999, 1-17

Berg, G.M., Driscoll, S., Hayashi, K., and Kudela, R., 2019. Effects of nitrogen source, concentration, and irradiance on growth rates of two diatoms endemic to northern San Francisco Bay. Aquatic Biology, 28, p33-43

Davis, KA, NS Banas, SN Giddings, SA Siedlecki, P MacCready, EJ Lessard, RM Kudela, and BM Hickey. 2015. Estuary-enhanced upwelling of marine nutrients fuels coastal productivity in the U.S. Pacific Northwest. Journal of Geophysical Research, 119.12: 8778-8799.

Kudela RM, Lucas AJ, Hayashi K, Howard M, and McLaughlin, K, 2015. Death from below: investigation of inhibitory factors in bloom development during a wastewater efflvent diversion. Estuarine, Coastal and Shelf Science. doi: 10.1016/j.ecss.2015.07.021.

Lucas, AJ, GC Pitcher, TA Probyn, and RM Kudela. 2014. The influence of diurnal winds on phytoplankton dynamics in a coastal upwelling system off southwestern Africa. Deep-Sea Research II, 101: 50-62.

Peacock, MDB, and RM Kudela. 2014. Evidence for active vertical migration by two dinoflagellates experiencing iron, nitrogen, and phosphorus limitation. Limnology and Oceanography, 59(3): 660-673.

Ryan, JP, et al. 2014. Application of the hyperspectral imager for the coastal ocean to phytoplankton ecology studies in Monterey Bay, CA, USA. Remote Sensing 2014, 6, 1007-1025; doi:10.3390/rs6021007

Jacox, M. G., C. A. Edwards, M. Kahru, D. L. Rudnick, and R. M. Kudela (2013), The potential for improving remote primary productivity estimates through subsurface chlorophyll and irradiance measurement, Deep-Sea Res. II, doi:10.1016/j.dsr2.2013.12.008.

Boyd, PW, et al., 2013. Marine phytoplankton temperature versus growth responses from polar to tropical waters - outcome of a scientific community-wide study. PLOS ONE vol 8 issue 5.

Calleja, MLI, et al. 2013. Changes in compound specific δ15N amino acid signatures and D/L ratios in marine
dissolved organic matter induced by heterotrophic bacterial reworking. Marine Chemisty 149, 32-44.

Peacock, MB and RM Kudela, 2013. Alkaline phosphatase activity detected in distinct phytoplankton communities in the northern Gulf of Alaska. Marine Ecology Progress Series v 473, 79-90.

Peacock, MB, and RM Kudela, 2012. A method for determining alkaline phosphatase activity in marine phytoplankton using spectrofluorometry. Journal of Microbiological Methods. doi:10.1016/j.mimet.2012.03.007

Zehr, JP, and RM Kudela, 2011. Nitrogen cycle of the open ocean: From genes to ecosystems. Annual Review of Marine Science 3:197-225.

Kudela, RM, 2010. Does horizontal mixing explain phytoplankton dynamics? Proceedings of the National Academy of Sciences 107:18235-18236.

Kudela RM, Seeyave S, Cochlan WP, 2010. The role of nutrients in regulation and promotion of harmful algal blooms in upwelling systems. Progress in Oceanography 85: 122-135.

Kudela RM, Howard MDA, Jenkins BD, Miller PE, Smith GJ, 2010. Using the molecular toolbox to compare harmful algal blooms in upwelling systems. Progress in Oceanography 85: 108-121.

Kudela, RM, AR Horner-Devine, NS Banas, BM Hickey, TD Peterson, RM McCabe, EJ Lessard, E Frame, KW Bruland, DA Jay, JO Peterson, WT Peterson, PM Kosro, SL Palacios, MC Lohan, and EP Dever, 2010. Multiple trophic levels fueled by recirculation in the Columbia River plume. Geophys. Res. Lett., doi:10.1029/2010GL044342

Zehr, JP, and RM Kudela, 2009. Photosynthesis in the open ocean. Science 326:945-946.

Howard, M.D., Smith, G.J, and Kudela, R.M. Phylogenetic Relationships of Yessotoxin-Producing Dinoflagellates, Based on the Large Subunit and Internal Transcribed Spacer Ribosomal DNA Domains. Applied and Environmental Microbiology, Jan. 2009, P. 54-63.